Metabarcoding data processing using dada2 - rbcL

  • Davis Fray (Creator)
  • Callahan McGovern (University of North Florida) (Creator)
  • Dale A. Casamatta (Creator)
  • Sarah Hamsher (Creator)

Dataset

Description

Using the code in this file, we will process rbcL metabarcoding data using the Dada2 pipeline. (DATA REDUCTION STAGE). Our goal is to remove primers, and then use the DADA2 algorithm to assess read quality, denoise, and merge our sequences. Finally, we will assign our sequences to ASVs and assign these to taxonomy using DADA2 and a reference database.
Date made availableOct 19 2023
PublisherZENODO

Cite this