Projects per year
Personal profile
Biography
Dr. Indika Kahanda is an Assistant Professor in the School of Computing at University of North Florida, where he directs the BioMedInfo (bioinformatics, and biomedical informatics lab). Prior to that Dr. Kahanda worked as an Assistant Professor in the Gianforte School of Computing at Montana State University. He received his Ph.D. in Computer Science from Colorado State University in 2016 in the area of Bioinformatics, a Master of Science in Computer Engineering from Purdue University in 2010, and a Bachelor of Science in Computer Engineering from University of Peradeniya, Sri Lanka in 2007.
Dr. Kahanda's research interests lie in the areas of Bioinformatics, and Biomedical Informatics. He focuses on the application of machine learning and natural language processing techniques to solve problems involving large-scale biological, molecular, and biomedical data. In particular, he investigates approaches to (1) develop computational methods for functional genomics and (2) develop natural language processing and text mining tools for biomedical literature. Current projects include developing computational tools for Pangenomics, developing novel techniques for automated student misconception detection, and automated inconsistency detection in biomedical literature.
Related documents
Education/Academic qualification
Computer Science, PhD
Electrical and Computer Engineering, MS
Engineering, Computer Engineering, BS
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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SDG 3 Good Health and Well-being
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SDG 6 Clean Water and Sanitation
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SDG 7 Affordable and Clean Energy
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Collaborations and top research areas from the last five years
Projects
- 3 Finished
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Metacognition and Misconceptions: Using Web-Based Writing Exercises in Gateway STEM Courses
Becker, J. P. (PI) & Kahanda, I. (CoPI)
10/1/21 → 9/30/25
Project: Research project
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Collaborative Research: Innovation: Pioneering New Approaches to Explore Pangenomic Space at Scale
Mumey, B. (PI) & Kahanda, I. (CoPI)
7/15/18 → 6/30/23
Project: Research project
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Collaborative Research: Innovation: Pioneering New Approaches to Explore Pangenomic Space at Scale
Mumey, B. (PI) & Kahanda, I. (CoPI)
7/15/18 → 6/30/23
Project: Research project
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FuseGO: Evaluating Embedding Fusion Across Species with Unequal Encoder Capacity for Automated Protein Function Prediction
Howell, A. & Kahanda, I., 2026, In: Proceedings of the International Florida Artificial Intelligence Research Society Conference, FLAIRS. 39, 1Research output: Contribution to journal › Conference article › peer-review
Open Access -
PanACRpred: Predicting Accessible Chromatin Regions in Pangenomes Using Motif Chaining
Warr, M. J., Dinh, T., Root, B., Onstott, E., Yu, K., Mudge, J., Ramaraj, T., Kahanda, I. & Mumey, B., 2026, p. 221-232. 12 p.Research output: Contribution to conference › Proceedings › peer-review
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RAMP: Exploring the Feasibility of Detecting Physics Student Misconceptions in Writing Assignments Using Large Language Models
Luedeke, E., Spiro, N., Kahanda, I., Lane, B., Spiers, J. C., Galanti, T. & Kanewala, U., 2026, In: Proceedings of the International Florida Artificial Intelligence Research Society Conference, FLAIRS. 39, 1Research output: Contribution to journal › Conference article › peer-review
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Enhanced Health Information Retrieval with Explainable Biomedical Inconsistency Detection Using Large Language Models
Lamichhane, P., Kahanda, I., Liu, X., Umapathy, K., Reddivari, S. & Arikawa, A., Nov 19 2025, p. 145-168. 24 p.Research output: Contribution to conference › Proceedings › peer-review
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Exploring the Feasibility of Identifying Nutrition Misinformation on Social Media
Lamichhane, P., Kahanda, I., Arikawa, A., Martin, C., Garcia, M., Figueiredo, C. & Benjamin, H., Jun 24 2025, Proceedings - 2025 IEEE/ACM International Conference on Connected Health: Applications, Systems and Engineering Technologies, CHASE 2025: Applications, Systems and Engineering Technologies, CHASE 2025. p. 319-323 5 p. (Proceedings of the ACM/IEEE International Conference on Connected Health: Applications, Systems and Engineering Technologies).Research output: Chapter or Contribution to Book › Conference contribution
Open Access
Datasets
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Dataset for Automated Medical Transcription
Kazi, N. (Contributor), Kuntz, M. (Contributor), Kanewala, U. (Contributor), Kahanda, I. (Contributor) & Arzubi, E. (Contributor), ZENODO, Nov 18 2020
DOI: 10.5281/zenodo.4279041, https://zenodo.org/record/4279041
Dataset
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PPPredSS Code
Pourreza Shahri, M. (Contributor) & Kahanda, I. (Contributor), ZENODO, Feb 27 2021
DOI: 10.5281/zenodo.5147499, https://zenodo.org/record/5147499
Dataset
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miRNAFinder-web-server: v1.0.0
Lokuge, S. (Creator), Jayasundara, S. (Creator), Ihalagedara, P. (Creator), Herath, D. (Creator) & Kahanda, I. (Creator), ZENODO, Apr 26 2021
DOI: 10.5281/zenodo.4719605, https://zenodo.org/record/4719605
Dataset
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miRNAFinder-dataset
Lokuge, S. (Creator), Jayasundara, S. (Creator), Ihalagedara, P. (Creator), Herath, D. (Creator) & Kahanda, I. (Creator), ZENODO, Apr 26 2021
DOI: 10.5281/zenodo.4721396, https://zenodo.org/record/4721396
Dataset
Press/Media
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Montana State University Professor Wins $300,000 NSF Grant to Improve Electrical Engineering Education
9/10/21
1 item of Media coverage
Press/Media: Research
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MSU OFFICE OF RESEARCH, ECONOMIC DEVELOPMENT AND GRADUATE EDUCATION AWARDS FUNDING FOR MSU INVENTIONS
12/20/19
1 item of Media coverage
Press/Media: Research