Stuart J. Chalk

Biography

Dr. Stuart J. Chalk is a Professor in the Department of Chemistry at the University of North Florida. Although trained as an analytical chemist, Dr. Chalk’s research now focuses on the areas of Chemical Informatics and Data Science. In particular, Dr. Chalk has projects focused on machine accessibility of solubility, online enhancements to the IUPAC Gold Book, automated extraction and annotation of chemical property data from PDF files, and scientific data models.

Dr. Chalk received an NSF funded grant in 2019 focusing on semantic integration of heterogeneous datasets from toxicology, medicine, materials, biodiversity, and chemistry. His latest project, “KnowLedger” a digital research notebook, was funded by the National Institute of Standards and Technology (NIST) in June 2021.

1 Finished
1 Active

EAGER: CI PAOS: KnowLedger: An Open Digital Notebook for Research Data Management
Chalk, S. J. (PI)
1/1/25 → 12/31/26
Project: Research project
RUI: Framework: Data - An Open Semantic Data Framework for Data-Driven Discovery
Chalk, S. J. (PI)
1/1/19 → 12/31/23
Project: Research project

22 Article
5 Review article
3 Chapter
1 Commentary/debate

Blockchain technology: driving change in the scientific research workflow
Lawlor, B., Chalk, S., Frey, J., Hayashi, K., Kochalko, D., Shute, R. & Sopek, M., Apr 1 2025, In: Pure and Applied Chemistry. 97, 4, p. 279-330 52 p.
Research output: Contribution to journal › Review article › peer-review

Open Access
Biological research and self-driving labs in deep space supported by artificial intelligence
Sanders, L. M., Scott, R. T., Yang, J. H., Qutub, A. A., Garcia Martin, H., Berrios, D. C., Hastings, J. J. A., Rask, J., Mackintosh, G., Hoarfrost, A. L., Chalk, S., Kalantari, J., Khezeli, K., Antonsen, E. L., Babdor, J., Barker, R., Baranzini, S. E., Beheshti, A., Delgado-Aparicio, G. M. & Glicksberg, B. S. & 36 others, Greene, C. S., Haendel, M., Hamid, A. A., Heller, P., Jamieson, D., Jarvis, K. J., Komarova, S. V., Komorowski, M., Kothiyal, P., Mahabal, A., Manor, U., Mason, C. E., Matar, M., Mias, G. I., Miller, J., Myers, J. G., Nelson, C., Oribello, J., Park, S. M., Parsons-Wingerter, P., Prabhu, R. K., Reynolds, R. J., Saravia-Butler, A., Saria, S., Sawyer, A., Singh, N. K., Snyder, M., Soboczenski, F., Soman, K., Theriot, C. A., Van Valen, D., Venkateswaran, K., Warren, L., Worthey, L., Zitnik, M. & Costes, S. V., Mar 2023, In: Nature Machine Intelligence. 5, 3, p. 208-219 12 p.
Research output: Contribution to journal › Review article › peer-review

Open Access
Biomonitoring and precision health in deep space supported by artificial intelligence
Scott, R. T., Sanders, L. M., Antonsen, E. L., Hastings, J. J. A., Park, S. M., Mackintosh, G., Reynolds, R. J., Hoarfrost, A. L., Sawyer, A., Greene, C. S., Glicksberg, B. S., Theriot, C. A., Berrios, D. C., Miller, J., Babdor, J., Barker, R., Baranzini, S. E., Beheshti, A., Chalk, S. & Delgado-Aparicio, G. M. & 36 others, Haendel, M., Hamid, A. A., Heller, P., Jamieson, D., Jarvis, K. J., Kalantari, J., Khezeli, K., Komarova, S. V., Komorowski, M., Kothiyal, P., Mahabal, A., Manor, U., Garcia Martin, H., Mason, C. E., Matar, M., Mias, G. I., Myers, J. G., Nelson, C., Oribello, J., Parsons-Wingerter, P., Prabhu, R. K., Qutub, A. A., Rask, J., Saravia-Butler, A., Saria, S., Singh, N. K., Snyder, M., Soboczenski, F., Soman, K., Van Valen, D., Venkateswaran, K., Warren, L., Worthey, L., Yang, J. H., Zitnik, M. & Costes, S. V., Mar 2023, In: Nature Machine Intelligence. 5, 3, p. 196-207 12 p.
Research output: Contribution to journal › Review article › peer-review

Open Access
Chemical data evaluation: General considerations and approaches for IUPAC projects and the chemistry community (IUPAC Technical Report)
Shaw, D. G., Bruno, I., Chalk, S., Hefter, G., Hibbert, D. B., Hutchinson, R. A., Magalhães, M. C. F., Magee, J., McEwen, L. R., Rumble, J., Russell, G. T., Waghorne, E., Walczyk, T. & Wallington, T. J., Oct 1 2023, In: Pure and Applied Chemistry. 95, 10, p. 1107-1120 14 p.
Research output: Contribution to journal › Article › peer-review

Open Access
CAS Common Chemistry in 2021: Expanding Access to Trusted Chemical Information for the Scientific Community
Jacobs, A., Williams, D., Hickey, K., Patrick, N., Williams, A. J., Chalk, S., Mcewen, L., Willighagen, E., Walker, M., Bolton, E., Sinclair, G. & Sanford, A., Jun 13 2022, In: Journal of Chemical Information and Modeling. 62, 11, p. 2737-2743 7 p.
Research output: Contribution to journal › Review article › peer-review

Open Access

FAIRChemistry _ Webinar 02 _"What is a chemical? Applying Chemical Data to Industry Challenges"
Chalk, S. (Creator), Bruno, I. (Creator), McEwen, L. (Creator) & Mustafa, F. (Creator), ZENODO, Oct 27 2022
DOI: 10.5281/zenodo.7259728, https://zenodo.org/records/7259728
Dataset
Chemical Analysis Use Case
Chalk, S. (Contributor), ZENODO, Mar 31 2023
DOI: 10.5281/zenodo.7789085, https://zenodo.org/records/7789085
Dataset
chalklab/Dataset-NIST-TRC-MySQL: Release v1.1.1
Chalk, S. (Creator), ZENODO, May 10 2023
DOI: 10.5281/zenodo.7922490, https://zenodo.org/record/7922490
Dataset
ChalkLab/Dataset-NIST-TRC-MySQL: Release v1.0
Chalk, S. (Creator), ZENODO, May 20 2022
DOI: 10.5281/zenodo.6567377, https://zenodo.org/record/6567377
Dataset
FAIRChemistry_ Webinar 01_"What is a chemical? Handling Chemical Data Across Disciplines"
Chalk, S. (Contributor), Bruno, I. (Contributor), McEwen, L. (Contributor) & Mustafa, F. (Contributor), ZENODO, Oct 27 2022
DOI: 10.5281/zenodo.7259102, https://zenodo.org/record/7259102
Dataset

Stuart J. Chalk

Personal profile

Biography

Projects

Research output

Datasets