Stuart J. Chalk

Biography

Dr. Stuart J. Chalk is a Professor in the Department of Chemistry at the University of North Florida. Although trained as an analytical chemist, Dr. Chalk’s research now focuses on the areas of Chemical Informatics and Data Science. In particular, Dr. Chalk has projects focused on machine accessibility of solubility, online enhancements to the IUPAC Gold Book, automated extraction and annotation of chemical property data from PDF files, and scientific data models.

Dr. Chalk received an NSF funded grant in 2019 focusing on semantic integration of heterogeneous datasets from toxicology, medicine, materials, biodiversity, and chemistry. His latest project, “KnowLedger” a digital research notebook, was funded by the National Institute of Standards and Technology (NIST) in June 2021.

22 Article
4 Review article
3 Chapter
1 Commentary/debate

Biological research and self-driving labs in deep space supported by artificial intelligence
Sanders, L. M., Scott, R. T., Yang, J. H., Qutub, A. A., Garcia Martin, H., Berrios, D. C., Hastings, J. J. A., Rask, J., Mackintosh, G., Hoarfrost, A. L., Chalk, S., Kalantari, J., Khezeli, K., Antonsen, E. L., Babdor, J., Barker, R., Baranzini, S. E., Beheshti, A., Delgado-Aparicio, G. M. & Glicksberg, B. S. & 36 others, Greene, C. S., Haendel, M., Hamid, A. A., Heller, P., Jamieson, D., Jarvis, K. J., Komarova, S. V., Komorowski, M., Kothiyal, P., Mahabal, A., Manor, U., Mason, C. E., Matar, M., Mias, G. I., Miller, J., Myers, J. G., Nelson, C., Oribello, J., Park, S. M., Parsons-Wingerter, P., Prabhu, R. K., Reynolds, R. J., Saravia-Butler, A., Saria, S., Sawyer, A., Singh, N. K., Snyder, M., Soboczenski, F., Soman, K., Theriot, C. A., Van Valen, D., Venkateswaran, K., Warren, L., Worthey, L., Zitnik, M. & Costes, S. V., Mar 2023, In: Nature Machine Intelligence. 5, 3, p. 208-219 12 p.
Research output: Contribution to journal › Review article › peer-review

Open Access
Biomonitoring and precision health in deep space supported by artificial intelligence
Scott, R. T., Sanders, L. M., Antonsen, E. L., Hastings, J. J. A., Park, S. M., Mackintosh, G., Reynolds, R. J., Hoarfrost, A. L., Sawyer, A., Greene, C. S., Glicksberg, B. S., Theriot, C. A., Berrios, D. C., Miller, J., Babdor, J., Barker, R., Baranzini, S. E., Beheshti, A., Chalk, S. & Delgado-Aparicio, G. M. & 36 others, Haendel, M., Hamid, A. A., Heller, P., Jamieson, D., Jarvis, K. J., Kalantari, J., Khezeli, K., Komarova, S. V., Komorowski, M., Kothiyal, P., Mahabal, A., Manor, U., Garcia Martin, H., Mason, C. E., Matar, M., Mias, G. I., Myers, J. G., Nelson, C., Oribello, J., Parsons-Wingerter, P., Prabhu, R. K., Qutub, A. A., Rask, J., Saravia-Butler, A., Saria, S., Singh, N. K., Snyder, M., Soboczenski, F., Soman, K., Van Valen, D., Venkateswaran, K., Warren, L., Worthey, L., Yang, J. H., Zitnik, M. & Costes, S. V., Mar 2023, In: Nature Machine Intelligence. 5, 3, p. 196-207 12 p.
Research output: Contribution to journal › Review article › peer-review

Open Access
Chemical data evaluation: General considerations and approaches for IUPAC projects and the chemistry community (IUPAC Technical Report)
Shaw, D. G., Bruno, I., Chalk, S., Hefter, G., Hibbert, D. B., Hutchinson, R. A., Magalhães, M. C. F., Magee, J., McEwen, L. R., Rumble, J., Russell, G. T., Waghorne, E., Walczyk, T. & Wallington, T. J., Oct 1 2023, In: Pure and Applied Chemistry. 95, 10, p. 1107-1120 14 p.
Research output: Contribution to journal › Article › peer-review

Open Access
CAS Common Chemistry in 2021: Expanding Access to Trusted Chemical Information for the Scientific Community
Jacobs, A., Williams, D., Hickey, K., Patrick, N., Williams, A. J., Chalk, S., Mcewen, L., Willighagen, E., Walker, M., Bolton, E., Sinclair, G. & Sanford, A., Jun 13 2022, In: Journal of Chemical Information and Modeling. 62, 11, p. 2737-2743 7 p.
Research output: Contribution to journal › Review article › peer-review

Open Access
IUPAC specification for the FAIR management of spectroscopic data in chemistry (IUPAC FAIRSpec) - guiding principles
Hanson, R. M., Jeannerat, D., Archibald, M., Bruno, I. J., Chalk, S. J., Davies, A. N., Lancashire, R. J., Lang, J. & Rzepa, H. S., Jun 1 2022, In: Pure and Applied Chemistry. 94, 6, p. 623-636 14 p.
Research output: Contribution to journal › Article › peer-review

Open Access

Chemical Analysis Use Case
Chalk, S. (Contributor), ZENODO, Mar 31 2023
DOI: 10.5281/zenodo.7789085, https://zenodo.org/records/7789085
Dataset
AI4SD Video: SciData: Semantic representation of scientific data and applications in chemistry
Chalk, S. J. (Creator) & Kanza, S. (Contributor), 2022
DOI: 10.5258/soton/ai3sd0237, https://eprints.soton.ac.uk/471458/
Dataset
ChalkLab/scidata_trc: Version 1.0
Chalk, S. (Creator) & montanasloan (Creator), ZENODO, Mar 4 2022
DOI: 10.5281/zenodo.6327233, https://zenodo.org/record/6327233
Dataset
iAdopt in SciData
Chalk, S. (Creator), ZENODO, Mar 31 2023
DOI: 10.5281/zenodo.7789111, https://zenodo.org/records/7789111
Dataset
stuchalk/ChemTwins-dev: Initial test community release
Chalk, S. (Creator), ZENODO, Mar 23 2022
DOI: 10.5281/zenodo.6380559, https://zenodo.org/records/6380559
Dataset

Stuart J. Chalk

Personal profile

Biography

Research output

Datasets